Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs17644394 chr5:169004222 T/G 1.71E-8 505 22.47 23.85 6.83 KM Plot
LGG rs17644417 chr5:169008697 G/T 1.55E-8 507 22.47 23.25 6.83 KM Plot
LGG rs17644451 chr5:169012656 G/C 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs17644562 chr5:169021098 A/G 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs17644580 chr5:169021323 G/A 1.54E-8 507 22.12 23.85 6.83 KM Plot
LGG rs17644624 chr5:169023214 A/G 1.64E-8 506 21.85 24.07 6.83 KM Plot
LGG rs17644660 chr5:169025924 C/T 1.64E-8 506 21.85 24.07 6.83 KM Plot
LGG rs17676908 chr7:127621738 T/G 1.42E-5 509 21.77 26.4 14.32 KM Plot
LGG rs17716738 chr7:127275449 C/T 4.65E-5 509 14.4 27.13 21.6 KM Plot
LGG rs17733988 chr7:127657793 G/A 4.44E-6 509 21.83 25.13 12.4 KM Plot
LGG rs1814267 chr16:10843313 A/G 2.13E-5 509 8.17 20.37 23.53 KM Plot
LGG rs1851614 chr11:54836269 C/T 0 503 23.63 18.1 0.38 KM Plot
LGG rs1883190 chr22:47001263 A/G 0 499 3.7 20.02 22.65 KM Plot
LGG rs190805861 chr5:169040211 G/T 1.57E-8 506 22.12 24.07 6.83 KM Plot
LGG rs191325210 chr6:53169941 C/T 2.75E-5 509 22.58 22.23 14.8 KM Plot